skbio.diversity.alpha.mcintosh_d¶
- skbio.diversity.alpha.mcintosh_d(counts)[source]¶
Calculate McIntosh dominance index D.
State: Experimental as of 0.4.0.
McIntosh dominance index D is defined as:
\[D = \frac{N - U}{N - \sqrt{N}}\]where \(N\) is the total number of individuals in the sample and \(U\) is defined as:
\[U = \sqrt{\sum{{n_i}^2}}\]where \(n_i\) is the number of individuals in the \(i^{\text{th}}\) OTU.
- Parameters:
counts (1-D array_like, int) – Vector of counts.
- Returns:
McIntosh dominance index D.
- Return type:
double
See also
Notes
The index was proposed in [1]. The implementation here is based on the description given in the SDR-IV online manual [2].
References