18 #ifndef __RIPLEY_BRICK_H__
19 #define __RIPLEY_BRICK_H__
22 #define _USE_MATH_DEFINES
26 #include <ripley/RipleyDomain.h>
49 double x1,
double y1,
double z1,
int d0=-1,
int d1=-1,
int d2=-1,
50 const std::vector<double>& points = std::vector<double>(),
51 const std::vector<int>& tags = std::vector<int>(),
65 virtual std::string getDescription()
const;
77 virtual void write(
const std::string& filename)
const;
84 void dump(
const std::string& filename)
const;
102 std::string filename,
103 int byteOrder,
int dataType)
const;
110 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
116 virtual bool ownSample(
int fsType,
index_t id)
const;
137 virtual dim_t getNumDataPointsGlobal()
const;
144 virtual void Print_Mesh_Info(
const bool full=
false)
const;
181 virtual double getLocalCoordinate(
index_t index,
int dim)
const;
187 virtual boost::python::tuple getGridParameters()
const;
196 const boost::python::tuple& filter)
const;
198 virtual Assembler_ptr createAssembler(std::string type,
217 virtual RankVector getOwnerVector(
int fsType)
const;
220 virtual dim_t getNumNodes()
const;
221 virtual dim_t getNumElements()
const;
222 virtual dim_t getNumFaceElements()
const;
223 virtual dim_t getNumDOF()
const;
224 virtual dim_t getNumDOFInAxis(
unsigned axis)
const;
225 virtual dim_t getFirstInDim(
unsigned axis)
const;
227 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const;
231 virtual void assembleIntegrate(std::vector<real_t>& integrals,
233 virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
235 virtual std::vector<IndexVector> getConnections(
bool includeShared=
false)
const;
236 #ifdef ESYS_HAVE_TRILINOS
237 virtual esys_trilinos::const_TrilinosGraph_ptr getTrilinosGraph()
const;
240 #ifdef ESYS_HAVE_PASO
242 bool reducedRowOrder,
bool reducedColOrder)
const;
252 void populateSampleIds();
253 void populateDofMap();
255 template<
typename Scalar>
259 template<
typename Scalar>
261 const std::vector<Scalar>& EM_S,
const std::vector<Scalar>& EM_F,
262 bool addS,
bool addF,
index_t firstNode,
int nEq=1,
int nComp=1)
const;
264 template<
typename ValueType>
265 void readBinaryGridImpl(
escript::Data& out,
const std::string& filename,
267 #ifdef ESYS_HAVE_BOOST_IO
268 template<
typename ValueType>
270 const std::string& filename,
273 template<
typename ValueType>
275 const std::string& filename,
int byteOrder)
const;
277 dim_t findNode(
const double *coords)
const;
281 const boost::python::tuple& filter)
const;
330 #ifdef ESYS_HAVE_PASO
335 #ifdef ESYS_HAVE_TRILINOS
337 mutable esys_trilinos::const_TrilinosGraph_ptr m_graph;
340 template<
typename Scalar>
341 void assembleIntegrateImpl(std::vector<Scalar>& integrals,
const escript::Data& arg)
const;
343 template <
typename S>
346 template <
typename S>
349 bool reduced,
S sentinel)
const;
365 ESYS_ASSERT(dim>=0 && dim<3,
"'dim' out of bounds");
372 return boost::python::make_tuple(
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:79
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:122
Base class for all escript domains.
Definition: AbstractDomain.h:51
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:44
Data represents a collection of datapoints.
Definition: Data.h:64
Definition: FunctionSpace.h:36
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:35
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Brick.h:398
const double * getLength() const
returns the lengths of the domain
Definition: ripley/src/Brick.h:204
int m_NX[3]
number of spatial subdivisions
Definition: ripley/src/Brick.h:296
IndexVector m_nodeId
Definition: ripley/src/Brick.h:320
IndexVector m_faceId
Definition: ripley/src/Brick.h:322
IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Brick.h:319
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: ripley/src/Brick.h:308
double m_origin[3]
origin of domain
Definition: ripley/src/Brick.h:287
const double * getElementLength() const
returns the lengths of an element
Definition: ripley/src/Brick.h:210
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: ripley/src/Brick.h:150
virtual IndexVector getNodeDistribution() const
returns the node distribution vector
Definition: ripley/src/Brick.h:169
virtual escript::Data randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const
double m_dx[3]
grid spacings / cell sizes of domain
Definition: ripley/src/Brick.h:293
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: ripley/src/Brick.h:156
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
Returns a Data object filled with random data passed through filter.
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Brick.h:358
IndexVector m_faceOffset
Definition: ripley/src/Brick.h:316
virtual boost::python::tuple getGridParameters() const
returns the tuple (origin, spacing, number_of_elements)
Definition: ripley/src/Brick.h:370
IndexVector m_dofMap
Definition: ripley/src/Brick.h:328
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: ripley/src/Brick.h:175
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: ripley/src/Brick.h:305
virtual const dim_t * getNumFacesPerBoundary() const
returns the number of face elements in the order (left,right,bottom,top,front,back) on current MPI ra...
Definition: ripley/src/Brick.h:163
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Brick.h:392
virtual dim_t getFirstInDim(unsigned axis) const
Definition: ripley/src/Brick.h:411
dim_t m_gNE[3]
total number of elements in each dimension
Definition: ripley/src/Brick.h:284
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: ripley/src/Brick.h:299
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: ripley/src/Brick.h:311
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Brick.h:379
IndexVector m_nodeDistribution
Definition: ripley/src/Brick.h:325
IndexVector m_elementId
Definition: ripley/src/Brick.h:321
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Brick.h:404
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Brick.h:363
virtual dim_t getDofOfNode(dim_t node) const
Definition: ripley/src/Brick.h:353
virtual dim_t getNumDOFInAxis(unsigned axis) const
Definition: ripley/src/Brick.h:385
Definition: ripley/src/DefaultAssembler3D.h:26
Definition: LameAssembler3D.h:26
RipleyDomain extends the AbstractContinuousDomain interface for the Ripley library and is the base cl...
Definition: ripley/src/RipleyDomain.h:103
int m_numDim
Definition: ripley/src/RipleyDomain.h:771
Definition: ripley/src/WaveAssembler3D.h:26
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:44
index_t dim_t
Definition: DataTypes.h:66
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:61
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:147
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:40
Definition: ripley/src/AbstractAssembler.h:26
std::vector< index_t > IndexVector
Definition: Ripley.h:44
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:63
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:117
std::map< std::string, int > TagMap
Definition: Ripley.h:47
std::vector< int > RankVector
Definition: Ripley.h:46
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:88
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:25
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:21
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:70